Fraunhofer Institute for Toxicology and Experimental Medicine
Fraunhofer Institute for Toxicology and Experimental Medicine

Malignant disease research

Development of personalized therapeutic strategies for tumor diseases in Regensburg

Recent projects and highlights

Research into metastatic disease, the development of diagnostics and pharmaceuticals is at the focus of Fraunhofer ITEM in Regensburg. The aims are to understand a patient’s individual condition, establish appropriate diagnostics, advance prevention and optimize therapies.

 

© Fraunhofer ITEM, Patrick Reinig

TRILO: Biomarker discovery in small cell populations down to single cells

Our therapy response identification through low input Omics (TRILO) platform focusses on multi-omics analyses of patient material for biomarker research and patient stratification studies. 

TRILO
 

© Fraunhofer ITEM

PEDRA: Preclinical drug efficacy testing in patient-derived samples

With our patient-derived ex vivo drug response assay (PEDRA) platform, we offer functional efficacy testing of drugs on primary patient material including the tumor microenvironment. 

PEDRA
 

© Fraunhofer ITEM

Cellular liquid biopsy: A milestone for personalized medicine in rare salivary gland cancer.

Liquid biopsies can be used to improve personalized medicine for patients with salivary gland cancer (SGC) and other rare tumor types.

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CSF diagnostics

Based on cerebrospinal fluid (CSF) analyses, scientists want to define pre-analytical standards for biomarker studies with CSF as well as develop molecular genetic tests.

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Biomarker studies help optimize treatment for rare or hard-to-treat cancers

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© Fraunhofer ITEM

Investigating early metastasis

In the Collaborative Research Center / Transregio (SFB/TRR) 305, scientists investigate the mechanisms of early colony formation of tumor cells in patient-specific model systems.

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© Fraunhofer ITEM, Patrick Reinig

Liquid biopsy concept

Researchers of the Fraunhofer ITEM and partners are collaborating on strategies to extend the liquid biopsy concept to the analysis of CSF to facilitate the diagnosis of brain tumors.

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Ex-vivo expansion of disseminated cancer cells is associated with progression of the disease in patients

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Single-cell miRNA sequencing methods

Comparison of methods and evaluation of performance and quality using different cell lines and circulating tumor cells.

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Acess to personalized oncology

In Coperation with "CCC Allianz WERA", we try to measured the regional outreach of respective Molecular Tumor Boards (MTBs).

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Project archive

Here you can find more projects sorted by our research and development competences. 

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Special expertise

Molecular biological characterization of single cancer cells

An area of special expertise of the researchers is the molecular biological characterization of single cancer cells, which can be collected as circulating tumor cells by liquid biopsy or isolated from lymph node tissue or bone marrow as disseminated cancer cells. In order to define new treatment monitoring strategies, the liquid biopsy concept and the technology for single-cell analysis have been further developed, so that cancer cells from the cerebrospinal fluid (CSF) can now also be isolated and analyzed.

Patient-specific therapies

For the development of patient-specific therapies, for example with monoclonal antibodies as checkpoint inhibitors and advanced therapy medicinal products (ATMPs), the researchers are establishing integrated testing strategies based on ex-vivo models derived from human tumor samples. In addition, they continue to enhance the high-throughput drug screening technology based on patient-specific models. The data management established at the institute and comprehensive bioinformatics enable custom-fit analyses of the generated data.

Risk assessment

Tumorigenesis is also an issue in the risk assessment of active pharmaceutical ingredients and chemicals. Fraunhofer ITEM is developing examples of risk assessment of nongentoxic substances by means of QSAR and in-vitro models on behalf of European regulatory authorities, including EMA, ECHA and EFSA. This will further add to the institute’s existing wealth of experience in exploring and applying integrated assessment and testing strategies (IATA) – risk assessment that is in line with the principle of the 3Rs.

Our Services: From molecular analysis to personalized therapy

Learn more about our services in the field of cancer research and personalized tumor therapy. 

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Publications

  • Abdin, S. M., Paasch, D., Lachmann, N. (2024). CAR macrophages on a fast track to solid tumor therapy. Nature Immunology 25(1): 11-12. doi: 10.1038/s41590-023-01696-7 https://www.nature.com/articles/s41590-023-01696-7
  • Adler, O., Zait, Y., Cohen, N., Blazquez, R., Doron, H., Monteran, L., Scharff, Y., Shami, T., Mundhe, D., Glehr, G., Kanner, A. A., Horn, S., Yahalom, V., Haferkamp, S., Hutchinson, J. A., Bleckmann, A., Nahary, L., Benhar, I., Katz, S. Y., Pukrop, T., Erez, N. (2023). Reciprocal interactions between innate immune cells and astrocytes facilitate neuroinflammation and brain metastasis via lipocalin-2. Nat Cancer [Epub ahead of print]. doi: 10.1038/s43018-023-00519-w https://www.nature.com/articles/s43018-023-00519-w
  • Agudo, J., Aguirre-Ghiso, J. A., Bhatia, M., Chodosh, L. A., Correia, A. L., Klein, C. A. (2024). Targeting cancer cell dormancy. Nature Reviews: Cancer 24: 97–104. doi: 10.1038/s41568-023-00642-x https://www.nature.com/articles/s41568-023-00642-x
  • Asami, M., Lam, B. Y. H., Hoffmann, M., Suzuki, T., Lu, X., Yoshida, N., Ma, M. K., Rainbow, K., Guzvic, M., VerMilyea, M. D., Yeo, G. S. H., Klein, C. A., Perry, A. C. F. (2023). A program of successive gene expression in mouse one-cell embryos. Cell Rep 42(2): 112023. doi: 10.1016/j.celrep.2023.112023 https://www.sciencedirect.com/science/article/pii/S2211124723000347?via%3Dihub - Open Access 28 February 2023
  • Feliciello, G., Czyz, Z. T., Polzer, B. M. (2024). Array-Based Comparative Genomic Hybridization for the Detection of Copy Number Alterations in Single Cells. Methods in Molecular Biology 2752: 167-187. doi: 10.1007/978-1-0716-3621-3_11 https://link.springer.com/protocol/10.1007/978-1-0716-3621-3_11
  • Franken, A., Kraemer, A., Sicking, A., Watolla, M., Rivandi, M., Yang, L., Warfsmann, J., Polzer, B. M., Friedl, T. W. P., Meier-Stiegen, F., Stoecklein, N. H., Dayan, D., Riethdorf, S., Mueller, V., Pantel, K., Koch, A., Hartkopf, A. D., Krawczyk, N., Ruckhaeberle, E., Niederacher, D., Fehm, T., Neubauer, H. (2023). Comparative analysis of EpCAM high-expressing and low-expressing circulating tumour cells with regard to their clonal relationship and clinical value. British Journal of Cancer [Epub ahead of print]. doi: 10.1038/s41416-023-02179-0 https://www.nature.com/articles/s41416-023-02179-0 - Open Access 23 februar 2023
  • Hücker, S. M., Kirsch, S. (2024). Single Cell Micro RNA Sequencing Library Preparation. Methods in Molecular Biology 2752: 189-199. doi: 10.1007/978-1-0716-3621-3_12 https://link.springer.com/protocol/10.1007/978-1-0716-3621-3_12
  • Klusa, D., Lohaus, F., Franken, A., Baumbach, M., Cojoc, M., Dowling, P., Linge, A., Offermann, A., Lock, S., Husman, D., Rivandi, M., Polzer, B., Freytag, V., Lange, T., Neubauer, H., Kucken, M., Perner, S., Holscher, T., Dubrovska, A., Krause, M., Kurth, I., Baumann, M., Peitzsch, C. (2023). Dynamics of CXCR4 positive circulating tumor cells in prostate cancer patients during radiotherapy. International Journal of Cancer [Epub ahead of print]. doi: 10.1002/ijc.34457 https://onlinelibrary.wiley.com/doi/10.1002/ijc.34457 - Open Access 2 februar 2023
  • Köstler, C., Polzer, B., Alberter, B. (2024). Circulating Tumor Cell Enrichment and Single-Cell Isolation Combining the CellSearch((R)) and DEPArray Systems. Methods in Molecular Biology 2752: 11-42. doi: 10.1007/978-1-0716-3621-3_2 https://link.springer.com/protocol/10.1007/978-1-0716-3621-3_2
  • Nowak, J., Bentele, M., Kutle, I., Zimmermann, K., Luhmann, J. L., Steinemann, D., Kloess, S., Koehl, U., Rossberg, W., Ahmed, A., Schaudien, D., Neubert, L., Kamp, J. C., Kuehnel, M. P., Warnecke, A., Schambach, A., Morgan, M. (2023). CAR-NK Cells Targeting HER1 (EGFR) Show Efficient Anti-Tumor Activity against Head and Neck Squamous Cell Carcinoma (HNSCC). Cancers 15(12): 3169. doi: 10.3390/cancers15123169 https://www.mdpi.com/2072-6694/15/12/3169  - Open Access
  • Reduzzi, C., Vismara, M., Schamberger, T., Silvestri, M., Motta, R., Polzer, B. M., Cappelletti, V. (2024). Isolation and Genomic Analysis of Circulating Tumor Cell Clusters in Cancer Patients. Methods in Molecular Biology 2752: 101-117. doi: 10.1007/978-1-0716-3621-3_7 https://link.springer.com/protocol/10.1007/978-1-0716-3621-3_7
  • Treitschke, S., Weidele, K., Varadarajan, A. R., Feliciello, G., Warfsmann, J., Vorbeck, S., Polzer, B., Botteron, C., Hoffmann, M., Dechand, V., Mederer, T., Weber, F., Werner-Klein, M., Robold, T., Hofmann, H. S., Werno, C., Klein, C. A. (2023). Ex vivo expansion of lung cancer-derived disseminated cancer cells from lymph nodes identifies cells associated with metastatic progression. International Journal of Cancer [Epub ahead of print]. doi: 10.1002/ijc.34658 https://onlinelibrary.wiley.com/doi/full/10.1002/ijc.34658 - Open Access